MatrixAligner
org.cipres.kepler.MatrixAligner

This MatrixAligner actor wraps the MatrixAligner CORBA service provided by the CIPRes software package. The MatrixAligner service implements the multipler sequence alignment directed by a guide tree.

Author(s): Zhijie Guan, Alex Borchers
Version:$Id: MatrixAligner.java,v 1.1 2006/05/19 11:51:23 guan Exp $


inputDataMatrix
A matrix containing the characters information of the analyzed taxa is passed to the RecIDCM3 actor through this input port. This port is an input port of type GENERAL.

inputTree
A tree in CIPRes tree data structure is passed to the RecIDCM3 actor through this input port. This tree is treated as an initial tree for the RecIDCM3 algorithm. This port is an input port of type GENERAL.

outputTree
The inferred tree is sent through this output port. This port is an output port of type GENERAL.