PhyloDataReader
org.cipres.kepler.PhyloDataReader

The PhyloDataReader actor reads and parses the data stored in Nexus format. This actor uses the data structure defined in the CIPRes software package.

Author(s): Zhijie Guan
Version:$Id: PhyloDataReader.java,v 1.4 2006/05/19 11:51:23 guan Exp $


inputNexusData
The phylogenetic data in Nexus format is passed to the PhyloDataReader actor through this input port. The data could contain information about the phylogenetic tree, data matrix, and/or Taxa. Generally this data is read from a Nexus input file, or retrieved from a phylogenetic info database, like TreeBase. This port is an input port of type GENERAL.

outputTree
The tree information contained in the input data is parsed and sent out through this output port. This port is an output port of type GENERAL.

outputDataMatrix
The data matrix information contained in the input data is parsed and sent out through this output port. This port is an output port of type GENERAL.

outputTaxaInfo
The taxa information contained in the input data is parsed and sent out through this output port. This port is an output port of type GENERAL.