TreeParser
org.cipres.kepler.TreeParser

The TreeParser actor parses tree data structure into the tree name, tree score, leaf set, and Newick, and sends them to different ouput ports.

Author(s): Zhijie Guan
Version:$Id: TreeParser.java,v 1.4 2006/05/19 11:51:23 guan Exp $


inputTree
The tree description in CIPRes tree data structure is passed to the TreeParser actor through this input port. This port is an input port of type GENERAL.

outputName
The detailed information of a tree is parsed and sent to different output ports. The tree name is sent to the outputName port. The type of this port will be set to GENERAL.

outputScore
The tree score is sent to the outputScore port. The type of this port will be set to GENERAL.

outputLeafSet
The tree's leaf set is sent to the outputLeafSet port. The type of this port will be set to GENERAL.

outputNewick
The tree's newick expression is sent to the outputNewick port. The type of this port will be set to GENERAL.