![]() Version: 1.0.0alpha9
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Welcome to the Kepler scientific workflow tool. You can select from one of the example workflows below or create your own by going to the file menu and selecting new/graph editor. Please send any questions/comments to our developer mailing list at kepler-dev@ecoinformatics.org Kepler (http://kepler-project.org) is a collaboration between computer and domain scientists with:
March 7, 2006 |
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Ready-to-run Workflows | |||||||||||||||||||||
Workflow | Description |
Ptolemy Introduction |
A link to the Ptolemy
Introduction Page (Kepler is based on the Ptolemy System) |
ENM (GARP) Workflows |
A link to a collection of
Environmental Niche Model Workflows |
Using
R in Kepler |
A link to a collection of
workflows which illustrate the use of R in Kepler |
EML2 Simple Plot Example | A workflow to test the EML 2.0 ingestion actor. |
Promotor Identification Workflow | A workflow that tests a number of the SciDAC actors including the genbank web service query actor and the BLAST actor. |
GEON Mineral Classifier | A workflow for modal classification of Igneous rocks. |
GEON Map Workflow | GEON geology map integration workflow using web services. |
Discrete Logistic | Single species Discrete Logistic model |
Lotka-Volterra Predator Prey Model | LV Predator Prey Model |
Lotka-Volterra Predator Prey Model with logistic growth | Logistic version of the LV Predator Prey Model |
Elk/Wolf Predator Prey Model | Elk/Wolf Predator Prey Model |
Biodiversity Index Calculator | Example of Calculations of Various Biodiversity Indices |
Orb Image Viewer Workflow | A workflow that displays image data coming from a remote camera via an Antelope ORB server. |
Orb Workflow | A workflow that shows a simple use of the Antelope ORB interface. |
Orb Packet Objects to Record Conversion Workflow | A workflow that extends the OrbPacketObjectDemo to demonstrate the use of several other actors, specifically ObjectToRecord. |
Geological Data Creation and Registration | A workflow to generate geological datasets on the fly and register them. |
Configurable Workflows |
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Workflow | Description (Please visit http://kepler.ecoinformatics.org/downloads.html for configuration instructions.) |
Database Query
(MS) Database Query (DB2) |
A workflow that tests a generic database query actor and shows the query result using a browser-based user interface. |
Example Grid-based Workflow | A workflow that tests and shows the use of ProxyInit, GlobusJob and GridFTP actors. |
ARC -> GRASS import example | A workflow that imports an ARC file into the GRASS database. |
Biodiversity Example | This is an example of how to calculate biodiversity indices. |
Local GAMESS Prepare, Run, and Display | A demonstration workflow that prepares, runs, and displays a number of quantum chemistry jobs on the local machine. It needs installations of GAMESS, Babel, Open Babel, and QMView and has easy-to-use interfaces to all these programs. |
Nimrod GAMESS Prepare, Run, and Display | A demonstration workflow that prepares, runs, and displays a number of quantum chemistry jobs on a computational Grid via the Nimrod toolkit for distributed parametric modeling. It needs installations of GAMESS, Babel, Open Babel, QMView, and Nimrod and has easy-to-use interfaces to all these programs. |
Other workflows will be added here as they are created.
Additions to Ptolemy by the Kepler team include many actors as well as additional dialog functionality within Ptolemy. The actor additions include:
Functionality has been added to create stub actors dynamically at runtime. To try out this functionality, open a new graph editor and choose view/new actor. Once you create the actor, it will be added to the actor library (the tree on the left of the screen) under actors/dynamic actor. The actor can then be drug out into the design screen but cannot be edited. This is useful for creating skeleton workflows which can then be implemented later.
To see the main Ptolemy intro screen click here.
Links
Science Environment for Ecological KnowledgeThis software is protected by this license.
This material is based upon work supported by the National Science Foundation under awards 0225676 for SEEK and 0225673 (AWSFL008-DS3) for GEON and by the Department of Energy under Contract No. DE-FC02-01ER25486 for SciDAC/SDM and by DARPA under Contract No. F33615-00-C-1703 for Ptolemy. In addition, Ptolemy receives support in part from the Center for Hybrid and Embedded Software Systems (CHESS) at UC Berkeley, which receives support from the National Science Foundation (NSF award #CCR-0225610), the State of California Micro Program, and the following companies: Agilent, DGIST, General Motors, Hewlett Packard, Infineon, Microsoft, and Toyota. Any opinions, findings and conclusions or recomendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation (NSF).